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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs7223966 1 rs6504171 chr17:61710010 MAP3K3 chr17:61699775-61773669:+ 0.26 5.33 1.5E-7 Body mass index
THCA cis rs7223966 1 rs6504173 chr17:61735056 FTSJ3 chr17:61896795-61905031:- 0.31 5.84 9.54E-9 Body mass index
THCA cis rs7223966 1 rs6504173 chr17:61735056 MAP3K3 chr17:61699775-61773669:+ 0.26 5.28 2.0E-7 Body mass index
THCA cis rs7223966 1 rs6504182 chr17:61823672 FTSJ3 chr17:61896795-61905031:- 0.31 6 3.81E-9 Body mass index
THCA cis rs7223966 1 rs6504182 chr17:61823672 MAP3K3 chr17:61699775-61773669:+ 0.26 5.35 1.35E-7 Body mass index
THCA cis rs35123781 1 rs650446 chr5:139054510 DNAJC18 chr5:138747381-138775139:- 0.17 3.81 0.000158 Schizophrenia
THCA cis rs7216064 1 rs6504542 chr17:65836642 C17orf58 chr17:65987218-65989765:- 0.24 4.78 2.36E-6 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs6504543 chr17:65837659 C17orf58 chr17:65987218-65989765:- 0.25 5 7.95E-7 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs6504548 chr17:65886048 C17orf58 chr17:65987218-65989765:- 0.25 5.15 3.9E-7 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs6504549 chr17:65888784 C17orf58 chr17:65987218-65989765:- 0.26 5.22 2.7E-7 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs6504555 chr17:65940727 C17orf58 chr17:65987218-65989765:- -0.24 -4.88 1.45E-6 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs6504663 1 rs6504661 chr17:48580126 MYCBPAP chr17:48585745-48608861:+ 0.31 5.7 2.08E-8 Visceral fat
THCA cis rs6504663 1 rs6504661 chr17:48580126 SPATA20 chr17:48620419-48633211:+ 0.17 3.86 0.000128 Visceral fat
THCA cis rs6504950 1 rs6504948 chr17:53049987 STXBP4 chr17:53046126-53241449:+ -0.15 -4.2 3.2E-5 Breast cancer
THCA cis rs6504950 1 rs6504948 chr17:53049987 TOM1L1 chr17:52978052-53039328:+ -0.13 -3.35 0.000871 Breast cancer